Berthel E, Vincent A, Eberst L, Torres AG, Dacheux E, Rey C, Marcel V, Paraqindes H, Lachuer J, Catez F, Pouplana LR, Treilleux I, Diaz JJ, Venezia ND. Uncovering the Translational Regulatory Activity of the Tumor Suppressor BRCA1. Cells. 2020 Apr 10;9(4). pii: E941. doi: 10.3390/cells9040941. PMID: 32290274 (polysomes profiling, transcriptome, Affymetrix microarrays, cancer)

Rousseau-Ralliard D, Valentino SA, Aubrière MC, Dahirel M, Lallemand MS, Archilla C, Jouneau L, Fournier N, Richard C, Aioun J, Vitorino Carvalho A, Jérôme L, Slama R, Duranthon V, Cassee FR, Chavatte-Palmer P, Couturier-Tarrade A. Effects of first-generation in utero exposure to diesel engine exhaust on second-generation placental function, fatty acid profiles and foetal metabolism in rabbits: preliminary results. Sci Rep. 2019 Jul 4;9(1):9710. doi: 10.1038/s41598-019-46130-x. PMID: 31273257 (RNA extraction, QRT-PCR, transcriptome, cheval)

Sanhueza D, Guégan JF, Jordan H, Chevillon C Environmental Variations in Mycobacterium ulcerans Transcriptome: Absence of Mycolactone Expression in Suboptimal Environments.Toxins (Basel). 2019 Mar 4;11(3). pii: E146. doi: 10.3390/toxins11030146 PMID: 30836720 (RNA-seq, petite quantité, bacteries, mycobacterium ulcerans).

Marie Chambard, Lysa N’guessan, Carole Plasson, Gaëlle Durambur, Marie-Christine Kiefer Meyer, Benjamin Lefranc, Jérôme Leprince, Azeddine Driouich, Maïté Vicré, Marie-Laure Follet-Gueye,et al Caractérisation génomique de l’ADN extracellulaire du RET (Root Extracellular Trap) et analyses transcriptomiques et protéomiques des cellules bordantes.2019 HAL Id: hal-02276917 (mRNA-seq, plantes)

Robles M, Couturier-Tarrade A, Derisoud E, Geeverding A, Dubois C, Dahirel M, Aioun J, Prezelin A, Calvez J, Richard C, Wimel L, Chavatte-Palmer P. Effects of dietary arginine supplementation in pregnant mares on maternal metabolism, placental structure and function and foal growth. Sci Rep. 2019 Apr 23;9(1):6461. doi: 10.1038/s41598-019-42941-0. PMID:31015538  (RNA extraction, QRT-PCR, transcriptome, cheval)

Pizzorno A, Terrier O, Nicolas de Lamballerie C, Julien T, Padey B, Traversier A, Roche M, Hamelin ME, Rhéaume C, Croze S, Escuret V, Poissy J, Lina B, Legras-Lachuer C, Textoris J, Boivin G, Rosa-Calatrava M  Repurposing of Drugs as Novel Influenza Inhibitors From Clinical Gene Expression Infection Signatures. Front Immunol. 2019 Jan 29;10:60. doi: 10.3389/fimmu.2019.00060. eCollection 2019. PMID: 30761132 (Transcriptome, microarrays Affymetrix, RNAseq, virologie)

Mateo M, Reynard S, Carnec X, Journeaux A, Baillet N, Schaeffer J, Picard C, Legras-Lachuer C, Allan R, Perthame E, Hillion KH, Pietrosemoli N, Dillies MA, Barrot L, Vallve A, Barron S, Fellmann L, Gaillard JC, Armengaud J, Carbonnelle C, Raoul H, Tangy F, Baize. Vaccines inducing immunity to Lassa virus glycoprotein and nucleoprotein protect macaques after a single shot. S. Sci Transl Med. 2019 Oct 2;11(512). pii: eaaw3163. doi: 10.1126/scitranslmed.aaw3163. PMID:31578242 (mRNA-seq, virologie, singe)

Schaeffer J, Reynard S, Carnec X, Pietrosemoli N, Dillies MA, Baize S. Non-Pathogenic Mopeia Virus Induces More Robust Activation of Plasmacytoid Dendritic Cells than Lassa Virus. Viruses. 2019 Mar 21;11(3). pii: E287. doi: 10.3390/v11030287. PMID: 30901952  (mRNA-seq, Illumina, virologie, singe)

Badawi S, Paccalet A, Harhous Z, Pillot B, Augeul L, Van Coppenolle F, Lachuer J, Kurdi M, Crola Da Silva C, Ovize M, Bidaux G. A Dynamic Transcriptional Analysis Reveals IL-6 Axis as a Prominent Mediator of Surgical Acute Response in Non-ischemic Mouse Heart. Front Physiol. 2019 Oct 31;10:1370. doi: 10.3389/fphys.2019.01370. eCollection 2019 PMID: 31736788. (mRNA-seq, Illumina, souris, physiologie cardiaque)

De Vallée A, Bally P, Bruel C, Chandat L, Choquer M, Dieryckx C, Dupuy JW, Kaiser S, Latorse MP, Loisel E, Mey G, Morgant G, Rascle C, Schumacher J, Simon A, Souibgui E, Viaud M, Villalba F, Poussereau N. A Similar Secretome Disturbance as a Hallmark of Non-pathogenic Botrytis cinerea ATMT-Mutants? Front Microbiol. 2019 Dec 6;10:2829. doi: 10.3389/fmicb.2019.02829. eCollection 2019. PMID: 31866989. (RNA-seq, champignon, infectiologie, plantes)

Valenzuela OA, Couturier-Tarrade A, Choi YH, Aubrière MC, Ritthaler J, Chavatte-Palmer P, Hinrichs K. Impact of equine assisted reproductive technologies (standard embryo transfer or intracytoplasmic sperm injection (ICSI) with in vitro culture and embryo transfer) on placenta and foal morphometry and placental gene expression. Reprod Fertil Dev. 2018 Jan;30(2):371-379. doi: 10.1071/RD16536. PMID: 28735601 (RT-PCR, cheval, transcriptome)

Rascalou A, Lamartine J, Poydenot P, Demarne F, Bechetoille N Mitochondrial damage and cytoskeleton reorganization in human dermal fibroblasts exposed to artificial visible light similar to screen-emitted light.J Dermatol Sci. 2018 May 5. pii: S0923-1811(18)30213-5. doi: 10.1016/j.jdermsci.2018.04.018. PMID: 29764717  (microarray beadchip illumina, humain, fibroblastes, peau, transcriptome)

Gravelle P, Péricart S, Tosolini M, Fabiani B, Coppo P, Amara N, Traverse-Gléhen A, Van Acker N, Brousset P, Fournie JJ, Laurent C.EBV infection determines the immune hallmarks of plasmablastic lymphoma.Oncoimmunology. 2018 Jul 30;7(10):e1486950. doi: 10.1080/2162402X.2018.1486950. eCollection 2018.PMID: 30288350  (transcriptome microarray affymetrix, lymphoma, EBV)

Mergoud Dit Lamarche A, Molin L, Pierson L, Mariol MC, Bessereau JL, Gieseler K, Solari F. UNC-120/SRF independently controls muscle aging and lifespan in Caenorhabditis elegans. Aging Cell. 2018 Apr;17(2). doi: 10.1111/acel.12713. Epub 2018 Jan 3 PMID: 30073022 (Affymetrix microarray, c elegans)

Xia Wu Hadi Kabalane Malik Kahli Nataliya Petryk Bastien LaperrousazYan Jaszczyszyn Guenola Drillon Frank-Emmanuel Nicolini Gaëlle Perot Aude Robert, Cédric Fund Frédéric Chibon Ruohong Xia Joëlle Wiels Françoise ArgoulVéronique Maguer-Satta Alain Arneodo Benjamin Audit Olivier Hyrien Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions  Nucleic Acids Research, Volume 46, Issue 19, 02 November 2018, Pages 10157–10172,  (mRNA-seq, cancer, Illumina)

Janin A, Bauer D, Ratti F, Valla C, Bertrand A, Christin E, Chopin E, Streichenberger N, Bonne G, Gache V, Cohen T, Méjat A. SMAD6 overexpression leads to accelerated myogenic differentiation of LMNA mutated cells. Sci Rep. 2018 Apr 4;8(1):5618. doi: 10.1038/s41598-018-23918—x PMID: 29618840 (transcriptome, Illumina beadchip)

Delloye-Bourgeois C, Bertin L, Thoinet K, Jarrosson L, Kindbeiter K, Buffet T, Tauszig-Delamasure S, Bozon M, Marabelle A, Combaret V, Bergeron C, Derrington E, Castellani V.Microenvironment-Driven Shift of Cohesion/Detachment Balance within Tumors Induces a Switch toward Metastasis in NeuroblastomaCancer Cell. 2017 Oct 9;32(4):427-443.e8. doi: 10.1016/j.ccell.2017.09.006.  (whole RNA-Seq, cancer)

Péricart S, Tosolini M, Gravelle P, Rossi C, Traverse-Glehen A, Amara N, Franchet C, Martin E, Bezombes C, Laurent G, Brousset P, Fournié JJ, Laurent C.Profiling Immune Escape in Hodgkin’s and Diffuse large B-Cell Lymphomas Using the Transcriptome and Immunostaining.Cancers (Basel). 2018 Oct 31;10(11). pii: E415. doi: 10.3390/cancers10110415.PMID: 30384489 (transcriptome microarray affymetrix, lymphoma, humain)

Sinel, C., Augagneur, Y., Sassi, M., Bronsard, J., Cacaci, M., Guérin, F., Sanguinetti, M., Meignen, P, Cattoir, V., and Felden, B. Small RNAs in vancomycin-resistant Enterococcus faecium involved in daptomycin response and resistance.  Scientific Reports7, 11067.  ( RNA-seq, bactéries)

Sinel, C., Cacaci, M., Meignen, P., Guérin, F., Davies, B. W., Sanguinetti, M. Giard, JC., Cattoir, V. Subinhibitory Concentrations of Ciprofloxacin Enhance Antimicrobial Resistance and Pathogenicity of Enterococcus faecium. Antimicrobial Agents and Chemotherapy 61(5), e02763–16. ( RNA-seq, bactéries)

Chatagnon A, Veber P, Morin V, Bedo J, Triqueneaux G, Sémon M, Laudet V, d’Alché-Buc F, Benoit G RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements.
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Gras B, Jacqueroud L, Wierinckx A, Lamblot C, Fauvet F, Lachuer J, Puisieux A, Ansieau S
Snail Family Members Unequally Trigger EMT and Thereby Differ in Their Ability to Promote the Neoplastic Transformation of Mammary Epithelial Cells PLoS One. 2014 Mar 17;9(3):e92254.

Caramel J, Papadogeorgakis E, Hill L, Browne GJ, Richard G, Wierinckx A, Saldanha G, Osborne J, Hutchinson P, Tse G, Lachuer J, Puisieux A, Pringle JH, Ansieau S, Tulchinsky E
A Switch in the Expression of Embryonic EMT-Inducers Drives the Development of Malignant Melanoma
Cancer Cell. 2013 Oct 14;24(4):466-80.

Housset M, Samuel A, Ettaiche M, Bemelmans A, Béby F, Billon N, Lamonerie
Loss of otx2 in the adult retina disrupts retinal pigment epithelium function, causing photoreceptor degeneration
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Dacheux E, Vincent A, Nazaret N, Combet C, Wierinckx A, Mazoyer S, Diaz JJ, Lachuer J, Venezia ND BRCA1-Dependent Translational Regulation in Breast Cancer Cells
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Altintas DM, Allioli N, Decaussin M, de Bernard S, Ruffion A, Samarut J, Vlaeminck-Guillem V
Differentially expressed androgen-regulated genes in androgen-sensitive tissues reveal potential biomarkers of early prostate cancer PLoS One. 2013 Jun 28;8(6):e66278.

Kratzer I, Liddelow SA, Saunders NR, Dziegielewska KM, Strazielle N, Ghersi-Egea JF
Developmental changes in the transcriptome of the rat choroid plexus in relation to neuroprotection
Fluids Barriers CNS. 2013 Aug 1;10(1):25. doi: 10.1186/2045-8118-10 25.

Durand S, Nguyen XN, Turpin J, Cordeil S, Nazaret N, Croze S, Mahieux R, Lachuer J, Legras-Lachuer C, Cimarelli A
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Vasiljevic A, Champier J, Figarella-Branger D, Wierinckx A, Jouvet A, Fèvre-Montange M
Molecular characterization of central neurocytomas: potential markers for tumor typing and progression
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Magre S, Rebourcet D, Ishaq M, Wargnier R, Debard C, Meugnier E, Vidal H, Cohen-Tannoudji J, Le Magueresse-Battistoni B. Gender differences in transcriptional signature of developing rat testes and ovaries following embryonic exposure to 2,3,7,8-TCDD. PLoS One. 2012;7(7):e40306.

Mathieu C., Guillaume V.  Volchkova V., Pohl C., Jacquot F., Looi R. Y., Wong K.T., Legras-Lachuer C, Volchkov V., Lachuer J., and Horvat B.
Nonstructural Nipah Virus C Protein Regulates both the Early Host Proinflammatory Response and Viral Virulence J.Virol. 2012 Oct;86(19):10766-75.

Loic Teulier, Cyril Dégletagne, Benjamin Rey, Jérémy Tornos, Céline Keime, Marc de Dinechin, Mireille Raccurt, Jean-Louis Rouanet, Damien Roussel and Claude Duchamp
Selective upregulation of lipid metabolism in skeletal muscle of foraging juvenile king penguins, an integrative study. Proceedings of the Royal Society B : Biological Sciences, 2012 In press

Herbert M., Salomon A., Feige JJ. And Thomas M.
Acquisition Order of Ras and p53 Gene Alterations Defines Distinct Adrenocortical Tumor Phenotypes.
PLoS Genetics May;8(5):e1002700. Epub 2012 May 10.

Kratzer I, Vasiljevic A, Rey C, Fevre-Montange M, Saunders N, Strazielle N, Ghersi-Egea JF
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Vendrell J., Thollet A., Nguyen NT., Ghayad SE., Vinot S., Bièche I., Grisard E., Josserand V., Coll JL., Roux P., Corbo L., Treilleux I., Rimokh R., and PA. Cohen
High ZNF217 mRNA level is a novel marker for poor prognosis in breast cancer and ZNF217 overexpression is associated with migration, invasion and EMT Cancer Research. 2012 May 25.

Anne-Pierre Morel, George W. Hinkal, Clémence Thomas, Frédérique Fauvet, Stéphanie Courtois-Cox, Anne Wierinckx, Mojgan Devouassous-Shisheboran, Agnes Tissier, Baptiste Gras, Julie Pourchet, Isabelle Puisieux, Gareth Browne, Douglas B. Spicer, Joel Lachuer, Stéphane Ansieau, and Alain Puisieux
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Hiriart E, Vavasseur A, Touat-Todeschini L, Yamashita A, Gilquin B, Lambert E, Perot J, Shichino Y, Nazaret N, Boyault C, Lachuer J, Perazza D, Yamamoto M, Verdel A
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Folate depletion changes gene expression of fatty acid metabolism, DNA synthesis, and circadian cycle in male mice Nutrition Res. 2012 32 124–132

Mathieu C., Vanessa G., Amélie S., Chai Ong K., K. Wong T., Legras-Lachuer C. and Horvat B.
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Vasiljevic A, Champier J, Figarella-Branger D, Wierinckx A, Jouvet A, Fèvre-Montange M.
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Szathmari A, Champier J, Ghersi-Egea JF, Jouvet A, Watrin C, Wierinckx A, Fèvre Montange M.
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Morgan Thenoz, Céline Vernin, Christiane Pinatel, Nicolas Nazaret, Joel Lachuer, Didier Auboeuf, Eric Wattel, Franck Mortreux
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Jordheim LP, Plesa A, Dreano M, Cros-Perrial E, Keime C, Herveau S, Demangel D, Vendrell JA, Dumontet C
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Zane L, Sibon D, Legras-Lachuer C, Lachuer J, Wierinckx A, Mehlen P, Delfau-Larue MH, Gessain A, Gout O, Pinatel C, Lançon A, Mortreux F, Wattel E
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Berthier-Vergnes O, Kharbili ME, de la Fouchardière A, Pointecouteau T, Verrando P, Wierinckx A, Lachuer J, Le Naour F, Lamartine J
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Popovici J, Comte G, Bagnarol E, Alloisio N, Fournier P, Bellvert F, Bertrand C, Fernandez MP
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Alloisio N, Queiroux C, Fournier P, Pujic P, Normand P, Vallenet D, Medigue C, Yamaura M, Kakoi K, Kucho K-I
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Degletagne C, Keime C, Rey B, de Dinechin M, Forcheron F, Chuchana P, Jouventin P, Gautier C, Duchamp C
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Laurence Josset, Julien Textoris, Béatrice Loriod, Olivier Ferraris, Vincent Moules, Bruno Lina, Catherine N’Guyen, Jean-Jacques Diaz, Manuel Rosa-Calatrava
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Michallet, Marie-Cecile, Leverrier, Yann, Baguet, Joel, Chambion, Solene, Marvel, Jacqueline
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Gallois A., Lachuer J., Yvert G., Wierinckx A., Brunet F., Rabourdin-Combe C., Delprat C.L, Jurdic P and Mazzorana M.
Genome-wide expression analysis establish dendritic cells as a new osteoclast precursor able to generate bone resorbing cells more efficiently than monocytes
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Ghayad SE, Vendrell JA, Bieche I, Spyratos F, Dumontet C, Treilleux I, Lidereau R, Cohen PA
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Maallem S., Wierinckx A., Lachuer J., Kwon MH and Tappaz ML
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Djebali S., Tebib J., Brytting M., Egeler RM., Rabourdin-Combe C., Henter JL., Arico M., Delprat C.
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Mazaud Guittot, Adelie Verot, F. Odet, MA Chauvin and B. le Magueresse-Battistoni
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Fèvre-Montange M, Champier J, Szathmari A, Wierinckx A, Mottolese C, Guyotat J, Figarella-Branger D, Jouvet A, Lachuer J
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